The CyberCell Database (CCDB): a comprehensive, self-updating, relational database to coordinate and facilitate in silico modeling of Escherichia coli
نویسندگان
چکیده
The CyberCell Database (CCDB: http://redpoll. pharmacy.ualberta.ca/CCDB) is a comprehensive, web-accessible database designed to support and coordinate international efforts in modeling an Escherichia coli cell on a computer. The CCDB brings together both observed and derived quantitative data from numerous independent sources covering many aspects of the genomic, proteomic and metabolomic character of E.coli (strain K12). The database is self-updating but also supports 'community' annotation, and provides an extensive array of viewing, querying and search options including a powerful, easy-to-use relational data extraction system.
منابع مشابه
Apply Uncertainty in Document-Oriented Database (MongoDB) Using F-XML
As moving to big data world where data is increasing in unstructured way with high velocity, there is a need of data-store to store this bundle amount of data. Traditionally, relational databases are used which are now not compatible to handle this large amount of data, so it is needed to move on to non-relational data-stores. In the current study, we have proposed an extension of the Mongo...
متن کاملApply Uncertainty in Document-Oriented Database (MongoDB) Using F-XML
As moving to big data world where data is increasing in unstructured way with high velocity, there is a need of data-store to store this bundle amount of data. Traditionally, relational databases are used which are now not compatible to handle this large amount of data, so it is needed to move on to non-relational data-stores. In the current study, we have proposed an extension of the Mongo...
متن کاملMetadata Enrichment for Automatic Data Entry Based on Relational Data Models
The idea of automatic generation of data entry forms based on data relational models is a common and known idea that has been discussed day by day more than before according to the popularity of agile methods in software development accompanying development of programming tools. One of the requirements of the automation methods, whether in commercial products or the relevant research projects, ...
متن کاملIn Silico Analysis of Glutaminase from Different Species of Escherichia and Bacillus
Background: Glutaminase (EC 3.5.1.2) catalyzes the hydrolytic degradation of L-glutamine to L-glutamic acid and has been introduced for cancer therapy in recent years. The present study was an in silico analysis of glutaminase to further elucidate its structure and physicochemical properties.Methods: Forty glutaminase protein sequences from different species of Escherichia and Bacillus obtained...
متن کاملAcquired Antimicrobial Resistance Genes of Escherichia coli Obtained from Nigeria: In silico Genome Analysis
Background: Antimicrobial resistance is a global problem with enormous public health and economic impact. This study was carried out to get an overview of acquired antimicrobial resistance gene sequences in the genomes of Escherichia coli isolated from different food sources and the environment in Nigeria. Methods: To determine the acquired antimicrobial-resistant genes prevalence, genome asse...
متن کاملذخیره در منابع من
با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید
عنوان ژورنال:
- Nucleic acids research
دوره 32 Database issue شماره
صفحات -
تاریخ انتشار 2004